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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs965513 chr9:100556109 A/G NKX6-1 chr4:85413140-85419603:- 0.48 8.35 7.4E-16 Box Plot
THCA rs965513 chr9:100556109 A/G PLCE1 chr10:95790569-96092580:+ 0.27 6.07 2.66E-9 Box Plot
THCA rs9657519 chr8:10945439 A/G SGK223 chr8:8175258-8244008:- 0.44 8.49 2.66E-16 Box Plot
THCA rs9657521 chr8:11830502 A/C SGK223 chr8:8175258-8244008:- -0.38 -7.38 7.27E-13 Box Plot
THCA rs9657542 chr8:10864363 G/C SGK223 chr8:8175258-8244008:- 0.36 6.56 1.4E-10 Box Plot
THCA rs9657544 chr8:10944616 C/G SGK223 chr8:8175258-8244008:- -0.35 -6.07 2.68E-9 Box Plot
THCA rs9657545 chr8:10945376 G/A SGK223 chr8:8175258-8244008:- 0.34 5.92 6.07E-9 Box Plot
THCA rs9657551 chr8:11398183 A/G SGK223 chr8:8175258-8244008:- -0.36 -6.66 7.53E-11 Box Plot
THCA rs965835 chr2:234748814 A/G TMOD1 chr9:100263462-100364030:+ 0.44 5.99 4.12E-9 Box Plot
THCA rs966760 chr8:3235613 T/C CSMD1 chr8:2792875-4852494:- -0.34 -6.58 1.22E-10 Box Plot
THCA rs9667706 chr11:77599550 A/T INTS4L1 chr7:64601603-64694600:+ 0.44 7.95 1.38E-14 Box Plot
THCA rs967005 chr6:28210688 C/T BTN3A2 chr6:26365387-26378548:+ -0.4 -8.4 5.23E-16 Box Plot
THCA rs9671943 chr14:39756540 A/T LOC647288 chr13:75811890-75814517:- -0.53 -9.92 3.29E-21 Box Plot
THCA rs9671953 chr14:39756568 C/T LOC647288 chr13:75811890-75814517:- -0.53 -9.93 2.86E-21 Box Plot
THCA rs9677169 chr2:132214697 A/G CCDC74B chr2:130896860-130902707:- 0.39 7.05 6.43E-12 Box Plot